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Cannot start OpenKM after server hang.

https://forum.openkm.com/viewtopic.php?t=10048

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Cannot start OpenKM after server hang.

PostPosted:Sun Jun 30, 2013 7:11 am
by Alexires
Hi guys.

Running OpenKM 6.2.4 on Ubuntu Server 12.04 LTS.

The server hung, so I had to hardware restart. After the restart, OpenKM failed to load, properly, giving me this error in the catalina.log during start up
Code: Select all
2013-06-30 08:40:32,538 [http-apr-0.0.0.0-8080-exec-3] ERROR com.openkm.dao.HibernateUtil - could not init listeners
org.hibernate.HibernateException: could not init listeners
	at org.hibernate.event.EventListeners.initializeListeners(EventListeners.java:205)
	at org.hibernate.cfg.Configuration.getInitializedEventListeners(Configuration.java:2010)
	at org.hibernate.cfg.Configuration.buildSessionFactory(Configuration.java:1872)
	at com.openkm.dao.HibernateUtil.getSessionFactory(HibernateUtil.java:202)
	at com.openkm.dao.HibernateUtil.getSessionFactory(HibernateUtil.java:114)
	at com.openkm.dao.LanguageDAO.findAll(LanguageDAO.java:99)
	at com.openkm.dao.LanguageDAO.findAll(LanguageDAO.java:76)
	at org.apache.jsp.login_005fdesktop_jsp._jspService(login_005fdesktop_jsp.java:165)
	at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432)
	at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
	at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:684)
	at org.apache.catalina.core.ApplicationDispatcher.doInclude(ApplicationDispatcher.java:593)
	at org.apache.catalina.core.ApplicationDispatcher.include(ApplicationDispatcher.java:530)
	at org.apache.jasper.runtime.JspRuntimeLibrary.include(JspRuntimeLibrary.java:954)
	at org.apache.jsp.login_jsp._jspService(login_jsp.java:65)
	at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432)
	at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
	at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:311)
	at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:116)
	at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:101)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:182)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:173)
	at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
	at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:259)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
	at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
	at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:999)
	at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:565)
	at org.apache.tomcat.util.net.AprEndpoint$SocketProcessor.run(AprEndpoint.java:1812)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:722)
Caused by: org.hibernate.search.SearchException: Unable to initialize directory provider: com.openkm.dao.bean.NodeBase
	at org.hibernate.search.store.DirectoryProviderFactory.createDirectoryProvider(DirectoryProviderFactory.java:170)
	at org.hibernate.search.store.DirectoryProviderFactory.createDirectoryProviders(DirectoryProviderFactory.java:101)
	at org.hibernate.search.spi.SearchFactoryBuilder.initDocumentBuilders(SearchFactoryBuilder.java:370)
	at org.hibernate.search.spi.SearchFactoryBuilder.buildNewSearchFactory(SearchFactoryBuilder.java:262)
	at org.hibernate.search.spi.SearchFactoryBuilder.buildSearchFactory(SearchFactoryBuilder.java:144)
	at org.hibernate.search.event.FullTextIndexEventListener.initialize(FullTextIndexEventListener.java:151)
	at org.hibernate.event.EventListeners$1.processListener(EventListeners.java:198)
	at org.hibernate.event.EventListeners.processListeners(EventListeners.java:181)
	at org.hibernate.event.EventListeners.initializeListeners(EventListeners.java:194)
	... 65 more
Caused by: org.hibernate.search.SearchException: Could not initialize index
	at org.hibernate.search.store.DirectoryProviderHelper.initializeIndexIfNeeded(DirectoryProviderHelper.java:164)
	at org.hibernate.search.store.DirectoryProviderHelper.createFSIndex(DirectoryProviderHelper.java:143)
	at org.hibernate.search.store.FSDirectoryProvider.initialize(FSDirectoryProvider.java:66)
	at org.hibernate.search.store.DirectoryProviderFactory.createDirectoryProvider(DirectoryProviderFactory.java:167)
	... 73 more
Caused by: java.io.IOException: read past EOF
	at org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:207)
	at org.apache.lucene.store.BufferedIndexInput.readByte(BufferedIndexInput.java:39)
	at org.apache.lucene.store.ChecksumIndexInput.readByte(ChecksumIndexInput.java:40)
	at org.apache.lucene.store.IndexInput.readInt(IndexInput.java:71)
	at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:260)
	at org.apache.lucene.index.IndexFileDeleter.<init>(IndexFileDeleter.java:168)
	at org.apache.lucene.index.IndexWriter.<init>(IndexWriter.java:1155)
	at org.hibernate.search.store.DirectoryProviderHelper.initializeIndexIfNeeded(DirectoryProviderHelper.java:159)
	... 76 more
2013-06-30 08:40:32,556 [http-apr-0.0.0.0-8080-exec-3] ERROR org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/OpenKM].[jsp] - Servlet.service() for servlet jsp threw exception
java.io.IOException: read past EOF
	at org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:207)
	at org.apache.lucene.store.BufferedIndexInput.readByte(BufferedIndexInput.java:39)
	at org.apache.lucene.store.ChecksumIndexInput.readByte(ChecksumIndexInput.java:40)
	at org.apache.lucene.store.IndexInput.readInt(IndexInput.java:71)
	at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:260)
	at org.apache.lucene.index.IndexFileDeleter.<init>(IndexFileDeleter.java:168)
	at org.apache.lucene.index.IndexWriter.<init>(IndexWriter.java:1155)
	at org.hibernate.search.store.DirectoryProviderHelper.initializeIndexIfNeeded(DirectoryProviderHelper.java:159)
	at org.hibernate.search.store.DirectoryProviderHelper.createFSIndex(DirectoryProviderHelper.java:143)
	at org.hibernate.search.store.FSDirectoryProvider.initialize(FSDirectoryProvider.java:66)
	at org.hibernate.search.store.DirectoryProviderFactory.createDirectoryProvider(DirectoryProviderFactory.java:167)
	at org.hibernate.search.store.DirectoryProviderFactory.createDirectoryProviders(DirectoryProviderFactory.java:101)
	at org.hibernate.search.spi.SearchFactoryBuilder.initDocumentBuilders(SearchFactoryBuilder.java:370)
	at org.hibernate.search.spi.SearchFactoryBuilder.buildNewSearchFactory(SearchFactoryBuilder.java:262)
	at org.hibernate.search.spi.SearchFactoryBuilder.buildSearchFactory(SearchFactoryBuilder.java:144)
	at org.hibernate.search.event.FullTextIndexEventListener.initialize(FullTextIndexEventListener.java:151)
	at org.hibernate.event.EventListeners$1.processListener(EventListeners.java:198)
	at org.hibernate.event.EventListeners.processListeners(EventListeners.java:181)
	at org.hibernate.event.EventListeners.initializeListeners(EventListeners.java:194)
	at org.hibernate.cfg.Configuration.getInitializedEventListeners(Configuration.java:2010)
	at org.hibernate.cfg.Configuration.buildSessionFactory(Configuration.java:1872)
	at com.openkm.dao.HibernateUtil.getSessionFactory(HibernateUtil.java:202)
	at com.openkm.dao.HibernateUtil.getSessionFactory(HibernateUtil.java:114)
	at com.openkm.dao.LanguageDAO.findAll(LanguageDAO.java:99)
	at com.openkm.dao.LanguageDAO.findAll(LanguageDAO.java:76)
	at org.apache.jsp.login_005fdesktop_jsp._jspService(login_005fdesktop_jsp.java:165)
	at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432)
	at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
	at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:684)
	at org.apache.catalina.core.ApplicationDispatcher.doInclude(ApplicationDispatcher.java:593)
	at org.apache.catalina.core.ApplicationDispatcher.include(ApplicationDispatcher.java:530)
	at org.apache.jasper.runtime.JspRuntimeLibrary.include(JspRuntimeLibrary.java:954)
	at org.apache.jsp.login_jsp._jspService(login_jsp.java:65)
	at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432)
	at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
	at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:311)
	at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:116)
	at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:101)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:182)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:173)
	at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
	at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:259)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
	at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
	at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:999)
	at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:565)
	at org.apache.tomcat.util.net.AprEndpoint$SocketProcessor.run(AprEndpoint.java:1812)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:722)
2013-06-30 08:40:32,573 [http-apr-0.0.0.0-8080-exec-3] ERROR org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/OpenKM].[jsp] - Servlet.service() for servlet [jsp] in context with path [/OpenKM] threw exception [org.apache.jasper.JasperException: javax.servlet.ServletException: java.lang.ExceptionInInitializerError] with root cause
java.io.IOException: read past EOF
	at org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:207)
	at org.apache.lucene.store.BufferedIndexInput.readByte(BufferedIndexInput.java:39)
	at org.apache.lucene.store.ChecksumIndexInput.readByte(ChecksumIndexInput.java:40)
	at org.apache.lucene.store.IndexInput.readInt(IndexInput.java:71)
	at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:260)
	at org.apache.lucene.index.IndexFileDeleter.<init>(IndexFileDeleter.java:168)
	at org.apache.lucene.index.IndexWriter.<init>(IndexWriter.java:1155)
	at org.hibernate.search.store.DirectoryProviderHelper.initializeIndexIfNeeded(DirectoryProviderHelper.java:159)
	at org.hibernate.search.store.DirectoryProviderHelper.createFSIndex(DirectoryProviderHelper.java:143)
	at org.hibernate.search.store.FSDirectoryProvider.initialize(FSDirectoryProvider.java:66)
	at org.hibernate.search.store.DirectoryProviderFactory.createDirectoryProvider(DirectoryProviderFactory.java:167)
	at org.hibernate.search.store.DirectoryProviderFactory.createDirectoryProviders(DirectoryProviderFactory.java:101)
	at org.hibernate.search.spi.SearchFactoryBuilder.initDocumentBuilders(SearchFactoryBuilder.java:370)
	at org.hibernate.search.spi.SearchFactoryBuilder.buildNewSearchFactory(SearchFactoryBuilder.java:262)
	at org.hibernate.search.spi.SearchFactoryBuilder.buildSearchFactory(SearchFactoryBuilder.java:144)
	at org.hibernate.search.event.FullTextIndexEventListener.initialize(FullTextIndexEventListener.java:151)
	at org.hibernate.event.EventListeners$1.processListener(EventListeners.java:198)
	at org.hibernate.event.EventListeners.processListeners(EventListeners.java:181)
	at org.hibernate.event.EventListeners.initializeListeners(EventListeners.java:194)
	at org.hibernate.cfg.Configuration.getInitializedEventListeners(Configuration.java:2010)
	at org.hibernate.cfg.Configuration.buildSessionFactory(Configuration.java:1872)
	at com.openkm.dao.HibernateUtil.getSessionFactory(HibernateUtil.java:202)
	at com.openkm.dao.HibernateUtil.getSessionFactory(HibernateUtil.java:114)
	at com.openkm.dao.LanguageDAO.findAll(LanguageDAO.java:99)
	at com.openkm.dao.LanguageDAO.findAll(LanguageDAO.java:76)
	at org.apache.jsp.login_005fdesktop_jsp._jspService(login_005fdesktop_jsp.java:165)
	at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432)
	at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
	at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:684)
	at org.apache.catalina.core.ApplicationDispatcher.doInclude(ApplicationDispatcher.java:593)
	at org.apache.catalina.core.ApplicationDispatcher.include(ApplicationDispatcher.java:530)
	at org.apache.jasper.runtime.JspRuntimeLibrary.include(JspRuntimeLibrary.java:954)
	at org.apache.jsp.login_jsp._jspService(login_jsp.java:65)
	at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432)
	at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390)
	at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:311)
	at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:116)
	at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:101)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:182)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:173)
	at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
	at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:259)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
	at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
	at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:999)
	at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:565)
	at org.apache.tomcat.util.net.AprEndpoint$SocketProcessor.run(AprEndpoint.java:1812)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:722)
Any ideas?

Re: Cannot start OpenKM after server hang.

PostPosted:Mon Jul 01, 2013 6:53 am
by jllort
Do you have backups ?
Do you use default openkm database HSQL or Mysql ?

Re: Cannot start OpenKM after server hang.

PostPosted:Mon Jul 01, 2013 8:48 am
by Alexires
No backups; I've migrated servers in the last month or two, and I've been too busy to do one (massive repository).

Running on MySQL

Re: Cannot start OpenKM after server hang.

PostPosted:Tue Jul 02, 2013 6:35 am
by jllort
Could be a problem with lucene index repository. This can be deleted and regenerated.
Try it:
1- stop openkm
2- Go to folder repository and move or delete the index folder to other path
3- Start openkm.

If it solves the problem, then you should reindex all files, before explain how to do it, tell us if it has solved your problem.

I suggest take a look your hard disk looking for defects or problems with mother board. A hang which damage lucene index, can be caused by I/O disk problem.

Re: Cannot start OpenKM after server hang.

PostPosted:Tue Jul 02, 2013 9:09 am
by Alexires
Thank you so much for your help.

I moved the /repository/index/ folder to /repository/index2/ and started OpenKM. It seems to have corrected the problem; I have successfully loaded the OpenKM log in page, and have successfully logged in as admin. The taxonomy is showing correctly.

How do I go about re-indexing all the files?

Re: Cannot start OpenKM after server hang.

PostPosted:Thu Jul 04, 2013 8:39 am
by pavila
You can re-index the repository from Administration > Utilities > Rebuild indexes.

Re: Cannot start OpenKM after server hang.

PostPosted:Fri Jul 05, 2013 7:07 am
by Alexires
Just out of curiosity, is reindexing a process that is relatively quick, or very slow? 750,000 files on the server...

Re: Cannot start OpenKM after server hang.

PostPosted:Mon Jul 08, 2013 8:00 am
by Alexires
Attempting to rebuild the index throws the following error:
Code: Select all
2013-07-08 09:16:43,131 [http-apr-0.0.0.0-8080-exec-2] WARN  org.hibernate.util.JDBCExceptionReporter - SQL Error: 0, SQLState: null
2013-07-08 09:16:43,162 [http-apr-0.0.0.0-8080-exec-2] ERROR org.hibernate.util.JDBCExceptionReporter - Already closed.
2013-07-08 09:16:43,184 [http-apr-0.0.0.0-8080-exec-2] ERROR org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/OpenKM].[RebuildIndexesServlet] - Servlet.service() for servlet [RebuildIndexesServlet] in context with path [/OpenKM] threw exception
org.hibernate.exception.GenericJDBCException: Cannot release connection
	at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:140)
	at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:128)
	at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:66)
	at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:52)
	at org.hibernate.jdbc.ConnectionManager.closeConnection(ConnectionManager.java:478)
	at org.hibernate.jdbc.ConnectionManager.cleanup(ConnectionManager.java:408)
	at org.hibernate.jdbc.ConnectionManager.close(ConnectionManager.java:347)
	at org.hibernate.impl.SessionImpl.close(SessionImpl.java:343)
	at org.hibernate.search.impl.FullTextSessionImpl.close(FullTextSessionImpl.java:328)
	at com.openkm.dao.HibernateUtil.close(HibernateUtil.java:316)
	at com.openkm.servlet.admin.RebuildIndexesServlet.luceneIndexesFlushToIndexes(RebuildIndexesServlet.java:261)
	at com.openkm.servlet.admin.RebuildIndexesServlet.luceneIndexes(RebuildIndexesServlet.java:171)
	at com.openkm.servlet.admin.RebuildIndexesServlet.doGet(RebuildIndexesServlet.java:97)
	at com.openkm.servlet.admin.RebuildIndexesServlet.service(RebuildIndexesServlet.java:80)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:311)
	at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:116)
	at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:101)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:182)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
	at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:173)
	at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
	at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:259)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
	at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
	at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:999)
	at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:565)
	at org.apache.tomcat.util.net.AprEndpoint$SocketProcessor.run(AprEndpoint.java:1812)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:722)
Caused by: java.sql.SQLException: Already closed.
	at org.apache.tomcat.dbcp.dbcp.PoolableConnection.close(PoolableConnection.java:114)
	at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.close(PoolingDataSource.java:191)
	at org.hibernate.connection.DatasourceConnectionProvider.closeConnection(DatasourceConnectionProvider.java:97)
	at org.hibernate.jdbc.ConnectionManager.closeConnection(ConnectionManager.java:474)
	... 49 more
I've started OpenKM using the '-XX:-UseGCOverheadLimit' command because I found trying to rebuild the index caused an "OutOfMemory" error. I don't know if that makes any different for the above reported error.

Re: Cannot start OpenKM after server hang.

PostPosted:Tue Jul 09, 2013 8:14 am
by pavila
It seems that you are having errors with the database connection, but never seen this kind of error. This only occurs when re-indexing?

Re: Cannot start OpenKM after server hang.

PostPosted:Tue Jul 09, 2013 10:49 am
by Alexires
Yes, it only occurs when re-indexing.

Re: Cannot start OpenKM after server hang.

PostPosted:Fri Jul 12, 2013 7:27 pm
by pavila
Sorry but never seen that error and can't reproduce in my test installation.

Re: Cannot start OpenKM after server hang.

PostPosted:Sun Jul 14, 2013 1:54 pm
by Alexires
Ok then. How exactly does the Lucene index first get populated? Does it occur when you import something into the repository? If this is the case, would it be possible to export the repository and then import it again to repopulate the Lucene index?

Re: Cannot start OpenKM after server hang.

PostPosted:Tue Jul 16, 2013 7:33 am
by jllort
If you continue experimenting problem with lucene index you can recreate entire.
- stop tomcat
- delete folder repository/index
- start tomcat
- go to administration -> database sql and execute
Code: Select all
update OKM_NODE_DOCUMENT set NDC_TEXT_EXTRACTED='F';

Re: Cannot start OpenKM after server hang.

PostPosted:Thu Jul 18, 2013 9:28 am
by Alexires
I've stopped tomcat, deleted /repository/index/, restarted tomcat, then gone to administration>database query and executed
Code: Select all
update OKM_NODE_DOCUMENT set NDC_TEXT_EXTRACTED='F';
No new messages are showing in /log/catalina.log, so I don't know if it is working properly. Any way of checking? How will I know when it is done....?

Edit: I don't think it worked from within OpenKM (I'm running it on MySQL), so I went and ran that query as a mysql query from the command line. All entries for "NDC_TEXT_EXTRACTED" are now F.

Now what? The text extraction queue states there are 728,000 extractions (roughly the size of the repository).

Also, what exactly does that sql query do? Does it make OpenKM think it hasn't extracted any text from any document, hence adds it to the text extraction queue for the cron process?

Re: Cannot start OpenKM after server hang.

PostPosted:Mon Jul 22, 2013 8:37 am
by jllort
You got lucene repository corrupted, then is needed to rebuld entire, that means put all files to pending queue which will need some time to be indiexed if you got 700K files.
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